MARS docs

MARS ISA-JSON model

Assay

Field	Type	Description	Required	Default value
comments	array	N/A	No
@id	any	N/A	No	N/A
characteristicCategories	array	N/A	No
dataFiles	array	N/A	No
filename	any	N/A	No	N/A
materials	any	N/A	No	N/A
measurementType	any	N/A	No	N/A
processSequence	array	N/A	No
technologyPlatform	any	N/A	No	N/A
technologyType	any	N/A	No	N/A
unitCategories	array	N/A	No

AssayMaterialType

Field	Type	Description	Required	Default value
samples	array	N/A	No
otherMaterials	array	N/A	No

Comment

Field	Type	Description	Required	Default value
@id	any	N/A	No	N/A
name	any	N/A	No	N/A
value	any	N/A	No	N/A

Component

Field	Type	Description	Required	Default value
componentName	any	N/A	No	N/A
componentType	any	N/A	No	N/A

Data

Field	Type	Description	Required	Default value
comments	array	N/A	No
@id	any	N/A	No	N/A
name	any	N/A	No	N/A
type	any	N/A	No	N/A

DataTypeEnum

Field	Type	Description	Required	Default value

Factor

Field	Type	Description	Required	Default value
comments	array	N/A	No
@id	any	N/A	No	N/A
factorName	any	N/A	No	N/A
factorType	any	N/A	No	N/A

FactorValue

Field	Type	Description	Required	Default value
@id	any	N/A	No	N/A
category	any	N/A	No	N/A
value	any	N/A	No	N/A
unit	any	N/A	No	N/A

Investigation

Field	Type	Description	Required	Default value
comments	array	N/A	No
@id	any	N/A	No	N/A
description	any	N/A	No	N/A
filename	any	N/A	No	N/A
identifier	any	N/A	No	N/A
ontologySourceReferences	array	N/A	No
people	array	N/A	No
publicReleaseDate	any	N/A	No	N/A
publications	array	N/A	No
studies	array	N/A	No
submissionDate	any	N/A	No	N/A
title	any	N/A	No	N/A

Material

Field	Type	Description	Required	Default value
comments	array	N/A	No
@id	any	N/A	No	N/A
characteristics	array	N/A	No
name	any	N/A	No	N/A
type	any	N/A	No	N/A
derivesFrom	array	N/A	No

MaterialAttribute

Field	Type	Description	Required	Default value
@id	any	N/A	No	N/A
characteristicType	any	N/A	No	N/A

MaterialAttributeValue

Field	Type	Description	Required	Default value
comments	array	N/A	No
@id	any	N/A	No	N/A
category	any	N/A	No	N/A
value	any	N/A	No	N/A
unit	any	N/A	No	N/A

OntologyAnnotation

Field	Type	Description	Required	Default value
comments	array	N/A	No
@id	any	N/A	No	N/A
annotationValue	any	N/A	No	N/A
termAccession	any	N/A	No	N/A
termSource	any	The abbreviated ontology name. It should correspond to one of the sources as specified in the ontologySourceReference section of the Investigation.	No	N/A

OntologySourceReference

Field	Type	Description	Required	Default value
comments	array	N/A	No
description	any	N/A	No	N/A
file	any	N/A	No	N/A
name	any	N/A	No	N/A
version	any	N/A	No	N/A

Person

Field	Type	Description	Required	Default value
comments	array	N/A	No
@id	any	N/A	No	N/A
address	any	N/A	No	N/A
affiliation	any	N/A	No	N/A
email	any	N/A	No	N/A
fax	any	N/A	No	N/A
firstName	any	N/A	No	N/A
lastName	any	N/A	No	N/A
midInitials	any	N/A	No	N/A
phone	any	N/A	No	N/A
roles	array	N/A	No

Process

Field	Type	Description	Required	Default value
comments	array	N/A	No
@id	any	N/A	No	N/A
date	any	N/A	No	N/A
executesProtocol	any	N/A	No	N/A
inputs	any	N/A	No
name	any	N/A	No	N/A
nextProcess	any	N/A	No	N/A
outputs	any	N/A	No
parameterValues	array	N/A	No
performer	any	N/A	No	N/A
previousProcess	any	N/A	No	N/A

ProcessParameterValue

Field	Type	Description	Required	Default value
category	any	N/A	No	N/A
value	any	N/A	No	N/A
unit	any	N/A	No	N/A

Protocol

Field	Type	Description	Required	Default value
comments	array	N/A	No
@id	any	N/A	No	N/A
components	array	N/A	No
description	any	N/A	No	N/A
name	any	N/A	No	N/A
parameters	array	N/A	No
protocolType	any	N/A	No	N/A
uri	any	N/A	No	N/A
version	any	N/A	No	N/A

ProtocolParameter

Field	Type	Description	Required	Default value
@id	any	N/A	No	N/A
parameterName	any	N/A	No	N/A

Publication

Field	Type	Description	Required	Default value
comments	array	N/A	No
authorList	any	N/A	No	N/A
doi	any	N/A	No	N/A
pubMedID	any	N/A	No	N/A
status	any	N/A	No	N/A
title	any	N/A	No	N/A

Sample

Field	Type	Description	Required	Default value
comments	array	N/A	No
@id	any	N/A	No	N/A
name	any	N/A	No	N/A
characteristics	array	N/A	No
factorValues	any	N/A	No	N/A
derivesFrom	array	N/A	No

Source

Field	Type	Description	Required	Default value
comments	array	N/A	No
@id	any	N/A	No	N/A
characteristics	array	N/A	No
name	any	N/A	No	N/A

Study

Field	Type	Description	Required	Default value
comments	array	N/A	No
@id	any	N/A	No	N/A
assays	array	N/A	No
characteristicCategories	array	N/A	No
description	any	N/A	No	N/A
factors	array	N/A	No
filename	any	N/A	No	N/A
identifier	any	N/A	No	N/A
materials	any	N/A	No	N/A
people	array	N/A	No
processSequence	array	N/A	No
protocols	array	N/A	No
publicReleaseDate	any	N/A	No	N/A
publications	array	N/A	No
studyDesignDescriptors	array	N/A	No
submissionDate	any	N/A	No	N/A
title	any	N/A	No	N/A
unitCategories	array	N/A	No

StudyMaterialType

Field	Type	Description	Required	Default value
sources	array	N/A	No
samples	array	N/A	No
otherMaterials	array	N/A	No