ISA-JSON model

Assay

Field
comments
Type
array
Description
Comments
Required
No
Default
Field
@id
Type
any
Description
@Id
Required
No
Default
N/A
Field
characteristicCategories
Type
array
Description
Characteristiccategories
Required
No
Default
Field
dataFiles
Type
array
Description
Datafiles
Required
No
Default
Field
filename
Type
any
Description
Filename
Required
No
Default
N/A
Field
materials
Type
any
Description
N/A
Required
No
Default
N/A
Field
measurementType
Type
any
Description
N/A
Required
No
Default
N/A
Field
processSequence
Type
array
Description
Processsequence
Required
No
Default
Field
technologyPlatform
Type
any
Description
Technologyplatform
Required
No
Default
N/A
Field
technologyType
Type
any
Description
N/A
Required
No
Default
N/A
Field
unitCategories
Type
array
Description
Unitcategories
Required
No
Default

Field	Type	Description	Required	Default value
comments	array	Comments	No
@id	any	@Id	No	N/A
characteristicCategories	array	Characteristiccategories	No
dataFiles	array	Datafiles	No
filename	any	Filename	No	N/A
materials	any	N/A	No	N/A
measurementType	any	N/A	No	N/A
processSequence	array	Processsequence	No
technologyPlatform	any	Technologyplatform	No	N/A
technologyType	any	N/A	No	N/A
unitCategories	array	Unitcategories	No

AssayMaterialType

Field
samples
Type
array
Description
Samples
Required
No
Default
Field
otherMaterials
Type
array
Description
Othermaterials
Required
No
Default

Field	Type	Description	Required	Default value
samples	array	Samples	No
otherMaterials	array	Othermaterials	No

Comment

Field
@id
Type
any
Description
@Id
Required
No
Default
N/A
Field
name
Type
any
Description
Name
Required
No
Default
N/A
Field
value
Type
any
Description
Value
Required
No
Default
N/A

Field	Type	Description	Required	Default value
@id	any	@Id	No	N/A
name	any	Name	No	N/A
value	any	Value	No	N/A

Component

Field
componentName
Type
any
Description
Componentname
Required
No
Default
N/A
Field
componentType
Type
any
Description
N/A
Required
No
Default
N/A

Field	Type	Description	Required	Default value
componentName	any	Componentname	No	N/A
componentType	any	N/A	No	N/A

Data

Field
comments
Type
array
Description
Comments
Required
No
Default
Field
@id
Type
any
Description
@Id
Required
No
Default
N/A
Field
name
Type
any
Description
Name
Required
No
Default
N/A
Field
type
Type
any
Description
N/A
Required
No
Default
N/A

Field	Type	Description	Required	Default value
comments	array	Comments	No
@id	any	@Id	No	N/A
name	any	Name	No	N/A
type	any	N/A	No	N/A

DataTypeEnum

Field	Type	Description	Required	Default value

Factor

Field
comments
Type
array
Description
Comments
Required
No
Default
Field
@id
Type
any
Description
@Id
Required
No
Default
N/A
Field
factorName
Type
any
Description
Factorname
Required
No
Default
N/A
Field
factorType
Type
any
Description
N/A
Required
No
Default
N/A

Field	Type	Description	Required	Default value
comments	array	Comments	No
@id	any	@Id	No	N/A
factorName	any	Factorname	No	N/A
factorType	any	N/A	No	N/A

FactorValue

Field
@id
Type
any
Description
@Id
Required
No
Default
N/A
Field
category
Type
any
Description
N/A
Required
No
Default
N/A
Field
value
Type
any
Description
Value
Required
No
Default
N/A
Field
unit
Type
any
Description
N/A
Required
No
Default
N/A

Field	Type	Description	Required	Default value
@id	any	@Id	No	N/A
category	any	N/A	No	N/A
value	any	Value	No	N/A
unit	any	N/A	No	N/A

Investigation

Field
comments
Type
array
Description
Comments
Required
No
Default
Field
@id
Type
any
Description
@Id
Required
No
Default
N/A
Field
description
Type
any
Description
Description
Required
No
Default
N/A
Field
filename
Type
any
Description
Filename
Required
No
Default
N/A
Field
identifier
Type
any
Description
Identifier
Required
No
Default
N/A
Field
ontologySourceReferences
Type
array
Description
Ontologysourcereferences
Required
No
Default
Field
people
Type
array
Description
People
Required
No
Default
Field
publicReleaseDate
Type
any
Description
Publicreleasedate
Required
No
Default
N/A
Field
publications
Type
array
Description
Publications
Required
No
Default
Field
studies
Type
array
Description
Studies
Required
No
Default
Field
submissionDate
Type
any
Description
Submissiondate
Required
No
Default
N/A
Field
title
Type
any
Description
Title
Required
No
Default
N/A

Field	Type	Description	Required	Default value
comments	array	Comments	No
@id	any	@Id	No	N/A
description	any	Description	No	N/A
filename	any	Filename	No	N/A
identifier	any	Identifier	No	N/A
ontologySourceReferences	array	Ontologysourcereferences	No
people	array	People	No
publicReleaseDate	any	Publicreleasedate	No	N/A
publications	array	Publications	No
studies	array	Studies	No
submissionDate	any	Submissiondate	No	N/A
title	any	Title	No	N/A

Material

Field
comments
Type
array
Description
Comments
Required
No
Default
Field
@id
Type
any
Description
@Id
Required
No
Default
N/A
Field
characteristics
Type
array
Description
Characteristics
Required
No
Default
Field
name
Type
any
Description
Name
Required
No
Default
N/A
Field
type
Type
any
Description
Type
Required
No
Default
N/A
Field
derivesFrom
Type
array
Description
Derivesfrom
Required
No
Default

Field	Type	Description	Required	Default value
comments	array	Comments	No
@id	any	@Id	No	N/A
characteristics	array	Characteristics	No
name	any	Name	No	N/A
type	any	Type	No	N/A
derivesFrom	array	Derivesfrom	No

MaterialAttribute

Field
@id
Type
any
Description
@Id
Required
No
Default
N/A
Field
characteristicType
Type
any
Description
N/A
Required
No
Default
N/A

Field	Type	Description	Required	Default value
@id	any	@Id	No	N/A
characteristicType	any	N/A	No	N/A

MaterialAttributeValue

Field
comments
Type
array
Description
Comments
Required
No
Default
Field
@id
Type
any
Description
@Id
Required
No
Default
N/A
Field
category
Type
any
Description
N/A
Required
No
Default
N/A
Field
value
Type
any
Description
Value
Required
No
Default
N/A
Field
unit
Type
any
Description
N/A
Required
No
Default
N/A

Field	Type	Description	Required	Default value
comments	array	Comments	No
@id	any	@Id	No	N/A
category	any	N/A	No	N/A
value	any	Value	No	N/A
unit	any	N/A	No	N/A

OntologyAnnotation

Field
comments
Type
array
Description
Comments
Required
No
Default
Field
@id
Type
any
Description
@Id
Required
No
Default
N/A
Field
annotationValue
Type
any
Description
Annotationvalue
Required
No
Default
N/A
Field
termAccession
Type
any
Description
Termaccession
Required
No
Default
N/A
Field
termSource
Type
any
Description
The abbreviated ontology name. It should correspond to one of the sources as specified in the ontologySourceReference section of the Investigation.
Required
No
Default
N/A

Field	Type	Description	Required	Default value
comments	array	Comments	No
@id	any	@Id	No	N/A
annotationValue	any	Annotationvalue	No	N/A
termAccession	any	Termaccession	No	N/A
termSource	any	The abbreviated ontology name. It should correspond to one of the sources as specified in the ontologySourceReference section of the Investigation.	No	N/A

OntologySourceReference

Field
comments
Type
array
Description
Comments
Required
No
Default
Field
description
Type
any
Description
Description
Required
No
Default
N/A
Field
file
Type
any
Description
File
Required
No
Default
N/A
Field
name
Type
any
Description
Name
Required
No
Default
N/A
Field
version
Type
any
Description
Version
Required
No
Default
N/A

Field	Type	Description	Required	Default value
comments	array	Comments	No
description	any	Description	No	N/A
file	any	File	No	N/A
name	any	Name	No	N/A
version	any	Version	No	N/A

Person

Field
comments
Type
array
Description
Comments
Required
No
Default
Field
@id
Type
any
Description
@Id
Required
No
Default
N/A
Field
address
Type
any
Description
Address
Required
No
Default
N/A
Field
affiliation
Type
any
Description
Affiliation
Required
No
Default
N/A
Field
email
Type
any
Description
Email
Required
No
Default
N/A
Field
fax
Type
any
Description
Fax
Required
No
Default
N/A
Field
firstName
Type
any
Description
Firstname
Required
No
Default
N/A
Field
lastName
Type
any
Description
Lastname
Required
No
Default
N/A
Field
midInitials
Type
any
Description
Midinitials
Required
No
Default
N/A
Field
phone
Type
any
Description
Phone
Required
No
Default
N/A
Field
roles
Type
array
Description
Roles
Required
No
Default

Field	Type	Description	Required	Default value
comments	array	Comments	No
@id	any	@Id	No	N/A
address	any	Address	No	N/A
affiliation	any	Affiliation	No	N/A
email	any	Email	No	N/A
fax	any	Fax	No	N/A
firstName	any	Firstname	No	N/A
lastName	any	Lastname	No	N/A
midInitials	any	Midinitials	No	N/A
phone	any	Phone	No	N/A
roles	array	Roles	No

Process

Field
comments
Type
array
Description
Comments
Required
No
Default
Field
@id
Type
any
Description
@Id
Required
No
Default
N/A
Field
date
Type
any
Description
Date
Required
No
Default
N/A
Field
executesProtocol
Type
any
Description
N/A
Required
No
Default
N/A
Field
inputs
Type
any
Description
Inputs
Required
No
Default
Field
name
Type
any
Description
Name
Required
No
Default
N/A
Field
nextProcess
Type
any
Description
N/A
Required
No
Default
N/A
Field
outputs
Type
any
Description
Outputs
Required
No
Default
Field
parameterValues
Type
array
Description
Parametervalues
Required
No
Default
Field
performer
Type
any
Description
Performer
Required
No
Default
N/A
Field
previousProcess
Type
any
Description
N/A
Required
No
Default
N/A

Field	Type	Description	Required	Default value
comments	array	Comments	No
@id	any	@Id	No	N/A
date	any	Date	No	N/A
executesProtocol	any	N/A	No	N/A
inputs	any	Inputs	No
name	any	Name	No	N/A
nextProcess	any	N/A	No	N/A
outputs	any	Outputs	No
parameterValues	array	Parametervalues	No
performer	any	Performer	No	N/A
previousProcess	any	N/A	No	N/A

ProcessParameterValue

Field
category
Type
any
Description
N/A
Required
No
Default
N/A
Field
value
Type
any
Description
Value
Required
No
Default
N/A
Field
unit
Type
any
Description
Unit
Required
No
Default
N/A

Field	Type	Description	Required	Default value
category	any	N/A	No	N/A
value	any	Value	No	N/A
unit	any	Unit	No	N/A

Protocol

Field
comments
Type
array
Description
Comments
Required
No
Default
Field
@id
Type
any
Description
@Id
Required
No
Default
N/A
Field
components
Type
array
Description
Components
Required
No
Default
Field
description
Type
any
Description
Description
Required
No
Default
N/A
Field
name
Type
any
Description
Name
Required
No
Default
N/A
Field
parameters
Type
array
Description
Parameters
Required
No
Default
Field
protocolType
Type
any
Description
N/A
Required
No
Default
N/A
Field
uri
Type
any
Description
Uri
Required
No
Default
N/A
Field
version
Type
any
Description
Version
Required
No
Default
N/A

Field	Type	Description	Required	Default value
comments	array	Comments	No
@id	any	@Id	No	N/A
components	array	Components	No
description	any	Description	No	N/A
name	any	Name	No	N/A
parameters	array	Parameters	No
protocolType	any	N/A	No	N/A
uri	any	Uri	No	N/A
version	any	Version	No	N/A

ProtocolParameter

Field
@id
Type
any
Description
@Id
Required
No
Default
N/A
Field
parameterName
Type
any
Description
N/A
Required
No
Default
N/A

Field	Type	Description	Required	Default value
@id	any	@Id	No	N/A
parameterName	any	N/A	No	N/A

Publication

Field
comments
Type
array
Description
Comments
Required
No
Default
Field
authorList
Type
any
Description
Authorlist
Required
No
Default
N/A
Field
doi
Type
any
Description
Doi
Required
No
Default
N/A
Field
pubMedID
Type
any
Description
Pubmedid
Required
No
Default
N/A
Field
status
Type
any
Description
N/A
Required
No
Default
N/A
Field
title
Type
any
Description
Title
Required
No
Default
N/A

Field	Type	Description	Required	Default value
comments	array	Comments	No
authorList	any	Authorlist	No	N/A
doi	any	Doi	No	N/A
pubMedID	any	Pubmedid	No	N/A
status	any	N/A	No	N/A
title	any	Title	No	N/A

Sample

Field
comments
Type
array
Description
Comments
Required
No
Default
Field
@id
Type
any
Description
@Id
Required
No
Default
N/A
Field
name
Type
any
Description
Name
Required
No
Default
N/A
Field
characteristics
Type
array
Description
Characteristics
Required
No
Default
Field
factorValues
Type
any
Description
Factorvalues
Required
No
Default
N/A
Field
derivesFrom
Type
array
Description
Derivesfrom
Required
No
Default

Field	Type	Description	Required	Default value
comments	array	Comments	No
@id	any	@Id	No	N/A
name	any	Name	No	N/A
characteristics	array	Characteristics	No
factorValues	any	Factorvalues	No	N/A
derivesFrom	array	Derivesfrom	No

Source

Field
comments
Type
array
Description
Comments
Required
No
Default
Field
@id
Type
any
Description
@Id
Required
No
Default
N/A
Field
characteristics
Type
array
Description
Characteristics
Required
No
Default
Field
name
Type
any
Description
Name
Required
No
Default
N/A

Field	Type	Description	Required	Default value
comments	array	Comments	No
@id	any	@Id	No	N/A
characteristics	array	Characteristics	No
name	any	Name	No	N/A

Study

Field
comments
Type
array
Description
Comments
Required
No
Default
Field
@id
Type
any
Description
@Id
Required
No
Default
N/A
Field
assays
Type
array
Description
Assays
Required
No
Default
Field
characteristicCategories
Type
array
Description
Characteristiccategories
Required
No
Default
Field
description
Type
any
Description
Description
Required
No
Default
N/A
Field
factors
Type
array
Description
Factors
Required
No
Default
Field
filename
Type
any
Description
Filename
Required
No
Default
N/A
Field
identifier
Type
any
Description
Identifier
Required
No
Default
N/A
Field
materials
Type
any
Description
N/A
Required
No
Default
N/A
Field
people
Type
array
Description
People
Required
No
Default
Field
processSequence
Type
array
Description
Processsequence
Required
No
Default
Field
protocols
Type
array
Description
Protocols
Required
No
Default
Field
publicReleaseDate
Type
any
Description
Publicreleasedate
Required
No
Default
N/A
Field
publications
Type
array
Description
Publications
Required
No
Default
Field
studyDesignDescriptors
Type
array
Description
Studydesigndescriptors
Required
No
Default
Field
submissionDate
Type
any
Description
Submissiondate
Required
No
Default
N/A
Field
title
Type
any
Description
Title
Required
No
Default
N/A
Field
unitCategories
Type
array
Description
Unitcategories
Required
No
Default

Field	Type	Description	Required	Default value
comments	array	Comments	No
@id	any	@Id	No	N/A
assays	array	Assays	No
characteristicCategories	array	Characteristiccategories	No
description	any	Description	No	N/A
factors	array	Factors	No
filename	any	Filename	No	N/A
identifier	any	Identifier	No	N/A
materials	any	N/A	No	N/A
people	array	People	No
processSequence	array	Processsequence	No
protocols	array	Protocols	No
publicReleaseDate	any	Publicreleasedate	No	N/A
publications	array	Publications	No
studyDesignDescriptors	array	Studydesigndescriptors	No
submissionDate	any	Submissiondate	No	N/A
title	any	Title	No	N/A
unitCategories	array	Unitcategories	No

StudyMaterialType

Field
sources
Type
array
Description
Sources
Required
No
Default
Field
samples
Type
array
Description
Samples
Required
No
Default
Field
otherMaterials
Type
array
Description
Othermaterials
Required
No
Default

Field	Type	Description	Required
sources	array	Sources	No
samples	array	Samples	No
otherMaterials	array	Othermaterials	No

ISA-JSON model

Assay

comments

@id

characteristicCategories

dataFiles

filename

materials

measurementType

processSequence

technologyPlatform

technologyType

unitCategories

AssayMaterialType

samples

otherMaterials

Comment

@id

name

value

Component

componentName

componentType

Data

comments

@id

name

type

DataTypeEnum

Factor

comments

@id

factorName

factorType

FactorValue

@id

category

value

unit

Investigation

comments

@id

description

filename

identifier

ontologySourceReferences

people

publicReleaseDate

publications

studies

submissionDate

title

Material

comments

@id

characteristics

name

type

derivesFrom

MaterialAttribute

@id

characteristicType

MaterialAttributeValue

comments

@id

category

value

unit

OntologyAnnotation

comments

@id

annotationValue

termAccession

termSource

OntologySourceReference

comments

description

file

name

version